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XNote++

Persistent sticky notes associated to emails. You can fulltext search with constraints/email them/print/bookmark/copy to clipboard.

If you have a large screen, you can even display the notes outside of TB's main window, so it won't hide anything.

Rated 4 out of 5 stars (133)
15,174 users

Topic Tree / Notebook and Wiki in TB

* Keep notes and ideas
* Style with images, tables, links, mindmaps etc.
* Full text search
* Copy and paste text/html
* Use templates
* Link notes
* Backup
* Print notes
* Real time sync/replication to other TB/FF installations

Rated 3 out of 5 stars (6)
382 users